Table of Contents

1 Example of Org-Babel for R Literate Programming

1.1 R text output

A simple summary.

x <- rnorm(10)

   Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
-2.0379  0.1207  0.3775  0.3122  0.6094  2.0433

1.2 R graphics output

Note we use the object x generated in previous code block, thanks to the header option :session *R*. The output graphics file is a.png.

y <- rnorm(10)
plot(x, y)


Same plot with larger dimension:

plot(x, y)


2 Example of math

\begin{equation} y = \exp\left[\frac{(x-\mu)^{2}}{2\sigma^{2}}\right] \end{equation}

3 Example of citations

references.bib is taken from https://gitlab.com/aprl/bibfile.

(make-local-variable 'citeproc-org-suppress-affixes-cite-link-types)
(setq citeproc-org-suppress-affixes-cite-link-types '("citealt" "citet")) ; default is '("citealt")

(Lowry et al., 1951)

Lowry et al., 1951

Lowry et al. (1951)

Lowry et al., 1951


Lowry, O. H., Rosebrough, N. J., Farr, A. L., & Randall, R. J. (1951). PROTEIN MEASUREMENT WITH THE FOLIN PHENOL REAGENT. Journal of Biological Chemistry, 193(1), 265–275. Retrieved from http://www.jbc.org/content/193/1/265.short